Manni Adam
Harwell Lab · UCSF

Postdoctoral fellow · Harwell Lab, UCSF

How does a genome build a brain?

I study how gene regulatory layers are coordinated as cells commit to identity in the developing brain: chromatin state, transcription, RNA processing and protein-level regulation. And how distinct disruptions to that coordination converge on shared neurodevelopmental vulnerability.


  • Developmental neurobiology
  • Gene regulation
  • Data science
Manni Adam

About

Coordination, not just instruction

I'm a developmental neurobiologist and postdoctoral fellow in the Harwell Lab at UCSF. My work asks how gene regulatory systems are coordinated during brain development: how chromatin state, transcription, RNA processing and protein-level regulation act together as cells commit to an identity, rather than as separate layers studied one at a time.

Before UCSF I completed a PhD at Cardiff University's MRC Centre for Neuropsychiatric Genetics and Genomics, an MSc in Neuroscience at King's College London, and a BSc in Biological Sciences at Bournemouth University.

Research

Three questions, one throughline

Three angles on one problem: how regulatory coordination is established, carried forward through developmental time, and lost.

Coupling

How are regulatory layers functionally coupled?

Cell identity is set by chromatin accessibility, enhancer activity and transcriptional output behaving as one system rather than in sequence. I ask how those layers stay coupled, along with RNA processing and protein-level regulation, through the cell-state transitions of cortical development.

Inheritance

How are developmental decisions inherited across time?

Progenitor states are transient; their consequences are not. I ask how early regulatory decisions are propagated through molecular memory mechanisms to constrain the later maturation of neurons and glia, long after the state that specified them has resolved.

Convergence

How do distinct perturbations converge on shared pathology?

Genetically distinct perturbations converge on overlapping neurodevelopmental phenotypes. I ask where those trajectories intersect: which regulatory disruptions cascade across molecular and cellular scales to generate shared vulnerability.

Approaches

How I get at them

Four complementary lines of work, from multi-layer measurement through to causal perturbation.

  • Multi-layer regulatory genomics

    Profile chromatin accessibility, factor binding and transcriptional output from the same developing tissue, so regulatory changes can be compared directly across layers instead of inferred between experiments.

    • ATAC-seq
    • CUT&RUN
    • ChIP-seq
    • RNA-seq
    • long-read
  • Lineage-resolved fate mapping

    Resolve regulatory programs across progenitor and differentiated states, linking the enhancer repertoire active at each point in a trajectory to the fates those cells go on to adopt.

    • trajectory analysis
    • enhancer repertoires
    • progenitor profiling
  • Functional testing

    Targeted perturbation of specific regulatory elements to establish causality, testing whether an element is required for a developmental transition rather than merely correlated with it.

    • CRISPR
    • dCas9
    • targeted perturbation
  • Integrative mechanism discovery

    Integrate genomic, transcriptomic and proteomic datasets computationally to recover the regulatory networks that no single assay resolves on its own.

    • genomics
    • transcriptomics
    • proteomics
    • network inference

Education

Training

  1. 2015–2019

    PhD, Neuroscience

    Cardiff University · MRC Centre for Neuropsychiatric Genetics and Genomics

  2. 2014–2015

    MSc, Neuroscience (Developmental Neurobiology)

    King's College London

    Distinction
  3. 2011–2014

    BSc, Biological Sciences

    Bournemouth University

    First Class Honours

Publications

Selected peer-reviewed work

  1. 2022

    Temporal and sequential transcriptional dynamics define lineage shifts in corticogenesis

    Mukhtar T, Breda J, Adam MA, et al.

    The EMBO Journal 41(24): e111132 Co-author doi.org/10.15252/embj.2022111132 ↗
  2. 2021

    Transcriptional profiling of sequentially generated septal neuron fates

    Turrero García M, Stegmann SK, Lacey TE, Reid CM, Hrvatin S, Weinreb C, Adam MA, Nagy MA, Harwell CC

    eLife 10: e71545 Co-author doi.org/10.7554/eLife.71545 ↗
  3. 2020

    Transcriptional regulation of MGE progenitor proliferation by PRDM16 controls cortical GABAergic interneuron production

    Turrero García M, Baizabal JM, Tran DN, Peixoto R, Wang W, Xie Y, Adam MA, et al.

    Development 147: dev187526 Co-author doi.org/10.1242/dev.187526 ↗
  4. 2020

    Epigenetic regulation of cortical neurogenesis: orchestrating fate switches at the right time and place

    Adam MA, Harwell CC

    Current Opinion in Neurobiology 63: 146–153 First author doi.org/10.1016/j.conb.2020.03.012 ↗
  5. 2017

    EHMT1/GLP: biochemical function and association with brain disorders

    Adam MA, Isles AR

    Epigenomes 1(3): 15 First author doi.org/10.3390/epigenomes1030015 ↗

CV & contact

Get in touch

Please feel free to reach out. The full CV here.

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